PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676728320
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 206aa    MW: 22729 Da    PI: 6.1517
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676728320genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.5e-054668123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y+C+ C + F++   L  H+++H
  676728320 46 YTCNFCRREFRSAQALGGHMNVH 68
               9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.12E-64373No hitNo description
Gene3DG3DSA:3.30.160.609.2E-44470IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00734668IPR015880Zinc finger, C2H2-like
PfamPF139122.1E-54669IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1984673IPR007087Zinc finger, C2H2
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MYGGAWMWNH SKNEELEDDD ESWEVKAFEQ DTKGNISGTT WPPRSYTCNF CRREFRSAQA  60
LGGHMNVHRR DRASKAHQGH AAAVAARSGS GSGGSRTAFL NSCVPPTTTL IIQSTASNIE  120
GLSHLYQLQN PNRMFGNSSD MVNFYGTTPF PSSNIEFSVL NSPVEVPPRL IEYSTGDDES  180
IGSMKETTRT SVSEPDLELR LGHKPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-134168229superman protein
2l1o_A2e-134168229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834920.0AC183492.1 Brassica oleracea Contig G, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013706190.11e-129PREDICTED: uncharacterized protein LOC106410250
RefseqXP_013646948.11e-129PREDICTED: uncharacterized protein LOC106351738
RefseqXP_013596098.11e-129PREDICTED: uncharacterized protein LOC106304236
TrEMBLA0A078EL701e-129A0A078EL70_BRANA; BnaC07g34840D protein
TrEMBLA0A0D3DEQ11e-129A0A0D3DEQ1_BRAOL; Uncharacterized protein
STRINGBra013257.1-P1e-124(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52842647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-110C2H2 family protein